I broke my flatpack

I tried to setup jellyfin, but jellyfin didn't see any subfolders in my home folder I tried to grant jellyfin the rights to read my home folder, but it looks like I did something wrong and now I can't update and install flatpak apps. This is what I see when I try to update flatpak apps:

Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user Warning: Flatpak system operation Deploy not allowed for user

Are there any suggestions I need to make to fix flatpack?