Oddly, after a few tries I managed to get past. I religiously back things up, and just last night pushed all my current dots.
I'm gonna run some drive diagnostics. If everything looks good, I'll just repartition and take this as a sign to only use encryption on secondary drives where I backup sensitive info.
I really need to get into pushing dot files. Every time I think „its not going to be that much“. Then I install a new system and like 20 apps, then I fiddle here and there. After a couple weeks I def rack up one or more hours of config.
My protip is to use symlinks, and then just keep all your dots in a project folder. Makes it super easy to keep iterating on them in realtime, and pushing changes.